Research Projects
Development of computational approaches for high precision and accuracy protein quantification
Centre for Genomic Regulation (CRG)
Barcelona,
Spain
Strategies for molecular diagnosis of Rare Disease patients through integrated analysis of multi-omics data
National Center for Genomic Analysis (CNAG)
Barcelona,
Spain
Algorithms and workflow for the in-depth characterization of the PTM landscape and PTM crosstalk
University of Southern Denmark (SDU)
Odense,
Denmark
Development of (deep) machine learning computational proteomics tools and algorithms and its application to MaxQuant
Max Planck Institute of Biochemistry (MPIB)
Martinsried,
Germany
Multi-omics data analysis in the MaxQuant and Perseus environments
Max Planck Institute of Biochemistry (MPIB)
Martinsried,
Germany
Machine Learning predictions of peptide behaviour for improved identification of modified peptides
Flemish Institute for Biotechnology (VIB)
Ghent,
Belgium
Development of smart acquisition methods using real-time control of instruments and machine learning
Institute of Pharmacology & Structural Biology (IPBS)
Toulouse,
France
Development of new signal processing algorithms of ion mobility MS data to improve the quantification of phosphoproteomics samples
Institute of Pharmacology & Structural Biology (IPBS)
Toulouse,
France
Transfer learning peptide properties of cross-linked peptides
Technical University of Munich (TUM)
Munich,
Germany
Establishment of proteome-to-phenome relationships by network analysis
ANAXOMICS Biotech S.L.
Barcelona,
Spain
The dark interactome – methods for discovering novel protein-nucleic acid interactions from complex samples
Eberhard Karls Universitaet Tübingen (EKUT)
Tübingen,
Germany
Improved algorithms and tools for the identification of novel proteoforms using top-down proteomics
Eberhard Karls Universitaet Tübingen (EKUT)
Tübingen,
Germany
MS DOSS: the next generation of hybrid algorithms for PTM-enabled peptide search
University of Applied Sciences Upper Austria (FH OOE)
Hagenberg,
Austria
Development of a complete data processing workflow for protein-protein and RNA-protein cross-linking
Thermo Fisher Scientific
Bremen,
Germany
Development of a gamified application for public understanding of complex scientific concepts and biological data
Tampere University (Tampereen korkeakoulusaatio sr) TAU
Tampere,
Finland