Research Projects

Development of computational approaches for high precision and accuracy protein quantification

Centre for Genomic Regulation (CRG)

Barcelona,

Spain

Strategies for molecular diagnosis of Rare Disease patients through integrated analysis of proteomics, metabolomics, genomics and phenomics data

National Center for Genomic Analysis (CNAG-CRG)

Barcelona,

Spain

Algorithms and workflow for the in-depth characterization of the PTM landscape and PTM crosstalk

University of Southern Denmark (SDU)

Odense,

Denmark

Development of (deep) machine learning computational proteomics tools and algorithms and its application to MaxQuant

Max Planck Institute of Biochemistry (MPIB)

Martinsried,

Germany

Multi-omics data analysis in the MaxQuant and Perseus environments

Max Planck Institute of Biochemistry (MPIB)

Martinsried,

Germany

Machine Learning predictions of peptide behaviour for improved identification of modified peptides

Flemish Institute for Biotechnology (VIB)

Ghent,

Belgium

Development of smart acquisition methods using real-time control of instruments and machine learning

Institute of Pharmacology & Structural Biology (IPBS)

Toulouse,

France

Development of new signal processing algorithms of ion mobility MS data to improve the quantification of phosphoproteomics samples

Institute of Pharmacology & Structural Biology (IPBS)

Toulouse,

France

Transfer learning peptide properties of cross-linked peptides

Technical University of Munich (TUM)

Munich,

Germany

Establishment of proteome-to-phenome relationships by network analysis

ANAXOMICS Biotech S.L.

Barcelona,

Spain

The dark interactome – methods for discovering novel protein-nucleic acid interactions from complex samples

Eberhard Karls Universitaet Tübingen (EKUT)

Tübingen,

Germany

Improved algorithms and tools for the identification of novel proteoforms using top-down proteomics

Eberhard Karls Universitaet Tübingen (EKUT)

Tübingen,

Germany

MS DOSS: the next generation of hybrid algorithms for PTM-enabled peptide search

University of Applied Sciences Upper Austria (FH OOE)

Hagenberg,

Austria

Development of a complete data processing workflow for protein-protein and RNA-protein cross-linking

Thermo Fisher Scientific

Bremen,

Germany

Development of a gamified application for public understanding of complex scientific concepts and biological data

Tampere University (Tampereen korkeakoulusaatio sr) TAU

Tampere,

Finland